个人简历
卢坤 博士，教授，博士生导师，西南大学含弘优青，重庆英才·创新创业领军人才、重庆市“**学者”特聘教授，现任农学与生物科技学院党委委员、副院长、农业科学研究院副院长、南方山地农业教育部工程研究中心主任，长期从事油菜基因组研究。先后主持国家重点研发计划课题1项、国家自然科学基金3项、省部级项目10余项，在nature communications、nucleic acids research和pnas等杂志发表论文130余篇，h指数24，参编英文专著3部，获国家发明专利授权7项，国际会议口头报告9次；任frontiers in plant science和oil crop science副主编，bmc plant biology、peerj、plos one、《中国油料作物学报》和《中国农学通报》编委，plant cell等50余种杂志审稿专家；被聘为全球油菜创新理事会（gcirc）理事、重庆市科技青年联合会常务理事、重庆市农学会理事；被聘为国家自然科学基金、神农中华农业科技奖、教育部学位中心、北京市和河北省科技计划项目评审专家；获中国农学会青年科技奖、重庆市十佳科技青年奖、中国作物学会油料专委会首届“青年创新奖”、首届川渝科学技术大会优秀论文一等奖、重庆市科协自然科学优秀学术论文奖。
研究方向
1. 油菜高产基因挖掘与分子机制解析
2. 油菜群体基因组及其适应性进化机制
3. 作物智慧育种与基因组大数据平台开发
学术贡献
1. 揭示了油菜的起源和演化规律，明确了重要性状的群体进化机制和关键基因功能，为油菜育种提供了新思路；
2. 揭示了油菜高产和高收获指数的遗传基础，阐明多个产量相关基因控制激素信号交互和细胞周期，提高产量的分子机制，主研多个绿色高产油菜新品种；
3. 整合基因组资源，开发多个基因组分析平台和油菜50k snp液相芯片，助力油菜全基因组选择育种和智慧育种。
研究生、博士后招生
1. 博士后：作物学、生物学
2. 博士研究生：作物遗传育种
3. 硕士研究生：作物遗传育种、遗传学、生物信息学
yb体育官方的联系方式
e-mail：swu.edu.cn
通信地址：重庆市北碚区天生路216号西南大学农业科学研究院；邮编：400716
英文简介
researchgate：https://www.researchgate.net/profile/kun-lu-15
orcid: https://orcid.org/0000-0003-1370-8633
web of science: https://www.webofscience.com/wos/author/record/975460
publons: https://publons.com/researcher/1230871/kun-lu/
google scholar:
学习经历
1998.09-2002.06：西南农业大学农学与生物科技学院，农学学士
2002.09-2004.06：西南农业大学农学与生物科技学院，生态学硕士（导师：郑钦玉）
2004.09-2008.06：西南大学农学与生物科技学院，农学博士（导师：李加纳）
工作经历
2008.07-2010.05：西南大学农学与生物科技学院，生物学博士后（合作导师：李加纳）
2012.09-2013.09：department of horticulture and landscape architecture, purdue university, postdoctoral fellow (合作导师：zhu jian-kang美国科学院院士)
2010.05-2017.06：西南大学农学与生物科技学院，副研究员，硕士生导师
2017.07-至今：西南大学农学与生物科技学院，教授，博士生导师
2018.06-至今：南方山地农业教育部工程技术研究中心主任
2019.06-至今：西南大学农业科学研究院副院长
2020.06-至今：西南大学农学与生物科技学院党委委员、副院长
荣誉和奖励
2021.12 西南大学“十三五”科研工作先进个人
2021.12 西南大学优秀研究生导师
2021.11 2021年川渝科学技术大会优秀论文三等奖
2021.07 重庆市教育系统先进基层党组织负责人
2021.07 西南大学优秀党务工作者
2021.02 中国农学会青年科技奖
2021.01 第六届重庆市十佳科技青年奖
2020.12 首届川渝科学技术大会优秀论文一等奖
2020.11 重庆英才·创新创业领军人才
2020.11 重庆市高校“**学者”特聘教授
2020.09 西南大学2018-2020年度优秀教师
2019.12 重庆市科协自然科学优秀学术论文奖
2018.12 中国作物学会油料专委会首届“青年创新奖”
2018.01 西南大学2017年优秀本科班主任
2013.12 中国烟草总公司贵州省公司科技进步奖二等奖
2011.11 重庆市高等学校青年骨干教师
教学成果
2021.12 重庆市教学成果奖一等奖（排名第6）
2021.08 第十七届“挑战杯”全国大学生课外学术科技作品竞赛重庆赛区一等奖指导教师
2021.08 第七届中国国际“互联网”大学生创新创业大赛重庆赛区优秀创新创业导师
2021.08 第七届中国国际“互联网”大学生创新创业大赛重庆赛区金奖指导教师
2020.12 第十二届“挑战杯”中国大学生创业计划竞赛二等奖指导教师
2020.12 西南大学第七届“含弘杯”学术课外学术科技作品竞赛一等奖指导教师
2020.10 第十二届“挑战杯”中国大学生创业计划竞赛重庆赛区金奖指导教师
2020.10 第六届中国国际“互联网”大学生创新创业大赛重庆赛区银奖指导教师
2017.11 第十五届“挑战杯”全国大学生课外学术科技作品竞赛三等奖指导教师
2017.07 第十五届“挑战杯”全国大学生课外学术科技作品竞赛重庆赛区特等奖指导教师
学术兼职
2021-至今：bmc plant biology编委
2021-至今：frontiers in plant science副主编
2021-至今：神农中华农业科技奖通讯评审专家
2019-至今：北京市、河北省科技计划项目评审专家
2019-至今：plos one编委
2020-2022：peerj编委
2020-至今：oil crop science、中国农学通报、中国油料作物学报编委
2020-至今：重庆市农学会理事
2019-至今：全球油菜创新理事会（gcirc）理事
2019-至今：重庆市科技青年联合会常务理事
2017-至今：教育部学位与研究生教育发展中心评审专家
2016-至今：重庆市生物化学与分子生物学会副监事长
2016-至今：国家自然科学基金项目通讯评审专家
2014-至今：plant cell等50余本杂志审稿专家
科研项目
1. 重庆英才计划项目：甘蓝型油菜高产基因的挖掘、机制解析和育种应用，40万，2021年-2024年 (cstc2021ycjh-bgzxm0033)
2.国家自然科学基金面上项目：甘蓝型油菜spl基因介导ros和sa途径提高菌核病抗性的分子机制，60万，2019年-2022年 (31871653)
3. 国家重点研发计划课题：长江上游及北方油菜高产优质适宜机械化新品种培育——油菜优异育种新材料的创制，456万，2018年-2020年 (2018yfd0100501)
4. 重庆市自然科学基金基础研究与前沿探索项目：基于转录组与全基因组关联分析发掘甘蓝型油菜结角性状相关基因，10万，2018年-2021年 (cstc2018jcyja1219)
5. 国家重点研发计划子课题：油菜、蔬菜重要性状的功能基因组与调控网络——油菜高收获指数和高产形成分子机制，60万，2016年-2020年 (2016yfd0101007)
6. 国家自然科学基金面上项目：甘蓝型油菜生长素极性运输异常导致茎秆弯曲的分子机制，58万，2016年-2019年 (31571701)
7. 国家自然科学基金青年基金项目：甘蓝型油菜组织特异型启动子的分离与鉴定，23万，2012年-2014年 (31101175)
8. 中央高校基本科研业务费重点项目：基于代谢谱和比较基因组学的芸薹属木质素代谢途径基因的功能进化研究，20万，2011年-2014年
9. 教育部高等学校博士学科点专项科研基金资助项目：甘蓝型油菜bnpap12基因家族根际有机磷利用的分子机制，6万，2010年-2013年
10. 重庆市自然科学基金项目：甘蓝型油菜bnskipa基因家族的耐旱分子机理研究，3万，2010年-2013年
11. 中国博士后科学基金项目：芸薹属禹氏三角物种中受磷饥饿诱导的pap12基因家族的功能进化研究，5万，2009年-2010年
教改项目
1. 重庆市研究生教育教学改革研究项目：基于obe理念的《基因组生物信息学》课程教学改革与实践，1.5万，2021年-2014年 (yjg213038)
代表性论文（*:通讯作者；#共同第一作者）
1. mengna yu#, rui zhang#, yajun liu, yuan gu, guoxia shang, yonghai fan, miao liu, shengting li, yuqiao tang, chuanfang wan, xuli wu, cunmin qu, jiana li, kun lu* (2022) quantitative trait locus mapping and transcriptome analysis reveal candidate genes for a stem bending mutant in rapeseed (brassica napus) industrial crops and products. 177: 114466 if2020= 5.645. (一区top期刊)
2. bo lei#, wei chang#, huina zhao, kai zhang, jing yu, shizhou yu, kai cai, jie zhang, kun lu* (2022) nitrogen application and differences in leaf number retained after topping affect the tobacco (nicotiana tabacum) transcriptome and metabolome. bmc plant biology 22: 38 if2020= 4.215.
3. bangyang sun#, yonghai fan#, huichun duan, xumei liu, yuling chen, guoxia shang, yingnan liu, hui yang, cunmin qu, jiana li, kun lu* (2022) genome-wide characterization of brassica napus indeterminate domain genes reveals a negative role for bna08.idd7 in plant development. industrial crops and products. 175: 114263 if2020= 5.645. (一区top期刊)
4. mingchao qian#, yonghai fan#, yanhua li, miao liu, wei sun, huichun duan, mengna yu, wei chang, yue niu, xiaodong li, ying liang, cunmin qu, jiana li, kun lu* (2021) genome-wide association study and transcriptome comparison reveal novel qtl and candidate genes that control petal size in rapeseed. journal of experimental botany. 72(10): 3597–3610 if2020= 6.992. (一区top期刊)
5. miao liu, wei chang, mengna yu, yonghai fan, guoxia shang, yuanfang xu, yue niu, xumei liu, hong zhu, lishi dai, zhanglin tang, kai zhang, liezhao liu, cunmin qu, jiana li, kun lu* (2021) overexpression of defective in anther dehiscence 1 increases rapeseed silique length through crosstalk between ja and auxin signaling. industrial crops and products. 168(2021): 113576. if2020= 5.645. (一区top期刊)
6. umer mahmood#, yonghai fan#, siyu wei#, yue niu, yanhua li, hualei huang, yuling chen, zhanglin tang, liezhao liu, cunmin qu, kai zhang, jiana li, kun lu* (2021) comprehensive analysis of polygalacturonase genes offers new insights into their origin and functional evolution in land plants. genomics. 113(2): 1096–1108. if2019= 6.205.
7. ali shahzad#, minchao qian#, bangyang sun, umer mahmood, shengting li, yonghai fan, wei chang, lishi dai, hong zhu, jiana li, cunmin qu*, kun lu* (2021) genome-wide association study identifies novel loci and candidate genes for drought stress tolerance in rapeseed. oil crop science. 6: 12–22.
8. yue niu, limin wu, yanhua li, hualei huang, mingchao qian, wei sun, hong zhu, yuanfang xu, yonghai fan, umer mahmood, benbo xu, kai zhang, cunmin qu, jiana li, kun lu* (2020) deciphering the transcriptional regulatory networks that control size, color, and oil content in brassica rapa seeds. biotechnology for biofuels 13: 87. if2018= 5.452. (一区top期刊)
9. haoyu chao#, tian li#, chaoyu luo#, hualei huang, yingfei ruan, xiaodong li, yue niu, yonghai fan, wei sun, kai zhang, jiana li, cunmin qu, kun lu* (2020) brassicaedb: a gene expression database for brassica crops. international journal of molecular sciences 21: 5831. if2019= 4.556. (top期刊)
10. cunmin qu#, nengwen yin#, si chen, shuxian wang, xingyu chen, huiyan zhao, shulin shen, fuyou fu, baojin zhou, xinfu xu, liezhao liu, kun lu*, jiana li* (2020) comparative analysis of the metabolic profiles of yellow- vs. black-seeded rapeseed using uplc−hesi-ms/ms and transcriptome analysis. journal of agricultural and food chemistry. 68: 3033–3049. if2018= 3.571. (一区top期刊)
11. wei chang#, huina zhao#, shizhou yu, jing yu, kai cai, wei sun, xumei liu, xiaodong li, mengna yu, shahzad ali, kai zhang, cunmin qu, bo lei*, kun lu* (2020) comparative transcriptome and metabolomic profiling reveal the complex mechanisms underlying the developmental dynamics of tobacco leaves. genomics. 112(6): 4009–4022. if2019= 6.205.
12. shulin shen#, fujun sun#, meichen zhu#, si chen, mingwei guan, rui chen, fang tang, nengwen yin, xinfu xu, zhanglin tang, jiana li, kun lu*, cunmin qu* (2020). genome-wide identification aintegumenta-like (ail) genes in brassica species and expression patterns during reproductive development in brassica napus l. plos one, 15(6): e0234411. if2019= 2.806.
13. yuanyuan wan#, zhen wang#, jichun xia, shulin shen, mingwei guan, meichen zhu, cailin qiao, fujun sun, ying liang, jiana li, kun lu*, cunmin qu* (2020) genome-wide analysis of phosphorus transporter genes in brassica and their roles in heavy metal stress tolerance. international journal of molecular sciences 21(6): 2209. if2019= 4.556. (top期刊)
14. kun lu#, lijuan wei#, xiaolong li#, yuntong wang, jian wu, miao liu, chao zhang, zhiyou chen, zhongchun xiao, hongju jian, feng cheng, kai zhang, hai du, xinchao cheng, cunming qu, wei qian, liezhao liu, rui wang, qingyuan zou, jiamin ying, xingfu xu, jiaqing mei, ying liang, you-rong chai, zhanglin tang, huafang wan, yu ni, yajun he, na lin, yonghai fan, wei sun, nan-nan li, gang zhou, hongkun zheng, xiaowu wang*, andrew h paterson*, jiana li* (2019) whole-genome resequencing reveals brassica napus origin and genetic loci involved in its improvement. nature communications. 10: 1154. if2019= 12.124. (一区top期刊)
15. zhiyou chen#, qiang huo#, hong yang#, hongju jian, cunmin qu, kun lu*, jiana li* (2019) joint rna-seq and mirna profiling analyses to reveal molecular mechanisms in regulating thickness of pod canopy in brassica napus. genes. 10(8): e591. if2018= 3.331.
16. kun lu*,#, tian li, jian he, wei chang, rui zhang, miao liu, mengna yu, yonghai fan, jinqi ma, wei sun, cunmin qu, liezhao liu, nannan li, ying liang, rui wang, wei qian, zhanglin tang, xinfu xu, bo lei, kai zhang*, jiana li* (2018) qprimerdb: a thermodynamics-based gene-specific qpcr primer database for 147 organisms. nucleic acids research 46: d1229–d1236. if2017= 11.147. (一区top期刊)
17. miao liu#, wei chang#, yonghai fan, wei sun, cunmin qu, kai zhang, liezhao liu, xingfu xu, zhanglin tang, jiana li, kun lu* (2018) genome-wide identification and characterization of nodule-inception-like protein (nlp) family genes in brassica napus. international journal of molecular sciences 19: 2270. if2018= 4.183. (top期刊)
18. haojie li#, yonghai fan#, jingyin yu, liang chai, jingfang zhang, jun jiang, cheng cui, benchuan zheng, liangcai jiang*, kun lu* (2018) genome-wide identification of flowering-time genes in brassica species and reveals a correlation between selective pressure and expression patterns of vernalization-pathway genes in brassica napus. international journal of molecular sciences 19: 3632. if2018= 4.183. (top期刊)
19. yonghai fan#, mengna yu#, miao liu, rui zhang, wei sun, mingchao qian, huichun duan, wei chang, jinqi ma, cunmin qu, kai zhang*, bo lei*, kun lu* (2017) genome-wide identification, evolutionary and expression analyses of the galactinol synthase gene family in rapeseed and tobacco. international journal of molecular sciences 18: 2768. if2018= 4.183. (top期刊)
20. kai zhang, zhengdan wu, daobin tang, kai luo, huixiang lu, yingying liu, jie dong, xin wang, changwen lv*, jichun wang*, kun lu* (2017) comparative transcriptome analysis reveals critical function of sucrose metabolism related-enzymes in starch accumulation in the storage root of sweet potato. frontiers in plant science 8:914. if2018= 4.106. (top期刊)
21. kun lu#,*, liu peng#, chao zhang, junhua lu, bo yang, zhongchun xiao, ying liang, xingfu xu, cunmin qu, kai zhang, liezhao liu, qinlong zhu, minglian fu, xiaoyan yuan, jiana li* (2017) genome-wide association and transcriptome analyses reveal candidate genes underlying yield-determining traits in brassica napus. frontiers in plant science 8: 206. if2018= 4.106. (top期刊)
22. kun lu#, zhongchun xiao#, hongju jian#, liu peng, cunmin qu, minglian fu, bin he, linmei tie, ying liang, xingfu xu, jiana li* (2016) a combination of genome-wide association and transcriptome analysis reveals candidate genes controlling harvest index-related traits in brassica napus. scientific reports 6: 36452. if2018= 4.011.
23. cunmin qu#, huiyan zhao#, fuyou fu#, kai zhang, jianglian yuan, liezhao liu, rui wang, xinfu xu, kun lu*, jia-na li* (2016) molecular mapping and qtl for expression profiles of flavonoid genes in brassica napus. frontiers in plant science 7:1691. if2018= 4.106. (top期刊)
24. cunmin qu#, huiyan zhao#, fuyou fu#, zhen wang, kai zhang, yan zhou, xin wang 4, rui wang, xinfu xu, zhanglin tang, kun lu*, jia-na li* (2016) genome-wide survey of flavonoid biosynthesis genes and gene expression analysis between black and yellow-seeded brassica napus. frontiers in plant science. 7:1755. if2018= 4.106. (top期刊)
25. kun lu#,*, wenjin guo#, junxing lu#, hao yu, cunmin qu, zhanglin tang, jiana li, yourong chai, ying liang* (2015) genome-wide survey and expression profile analysis of the mitogen-activated protein kinase (mapk) gene family in brassica rapa. plos one 10: e0132051. if2018= 2.776.
26. cunmin qu#, fuyou fu#, miao liu#, huiyan zhao, chuan liu, jiana li, zhanglin tang, xinfu xu, xiao qiu, rui wang*, kun lu* (2015) comparative transcriptome analysis of recessive male sterility (rgms) in sterile and fertile brassica napus lines. plos one, 10: e0144118. if2018= 2.776.
27. bo lei#, kun lu#,*, fuzhang ding, kai zhang, yi chen, huina zhao, lin zhang, zhu ren, cunmin qu, wenjing guo, jing wang, wenjie pan* (2014) rna sequencing analysis reveals transcriptomic variations in tobacco (nicotiana tabacum) leaves affected by climate, soil, and tillage factors. international journal of molecular sciences 15(4): 6137−6160. if2018= 4.183. (top期刊)
28. bo lei, xue-hua zhao, kai zhang, jie zhang, wei ren, zhu ren, yi chen, hui-na zhao, wen-jie pan, wei chen, hong-xun li, wen-ya deng, fu-zhang ding*, kun lu* (2013) comparative transcriptome analysis of tobacco (nicotiana tabacum) leaves to identify aroma compound-related genes expressed in different cultivated regions. molecular biology reports 40: 345−357. if2018= 2.107.
29. cunmin qu#, fuyou fu#, kun lu#, kai zhang, rui wang, xinfu xu, min wang, junxing lu, huafang wan, tang zhanglin, jiana li (2013) differential accumulation of phenolic compounds and expression of related genes in black- and yellow-seeded brassica napus. journal of experimental botany 64(10): 2885−2898. if2017=5.360. (一区top期刊)
30. kun lu, you-rong chai*, kai zhang, rui wang, li chen, bo lei, jun lu, xin-fu xu, jia-na li (2008). cloning and characterization of phosphorus starvation inducible brassica napus purple acid phosphatase 12 gene family, and imprinting of a recently evolved mite-minisatellite twin structure. theoretical and applied genetics 117: 963–975. if2017= 3.926. (一区top期刊)
31. kun lu, jia-na li, wei-ran zhong, kai zhang, fu-you fu, you-rong chai* (2008). isolation, characterization and phosphate-starvation inducible expression of potential brassica napus purple acid phosphatase 17 (bnpap17) gene family. botanical studies, 49(3), 199–213.
英文专著
1. kun lu, rod snowdon, jiana li*. case study for trait-related gene evolution: glucosinolates. in: liu s., snowdon r., chalhoub b. (eds) the brassica napus genome. compendium of plant genomes. springer, cham. 2018 oct 23; pp 199-222. doi: 10.1007/978-3-319-43694-4_12.
2. yonghai fan, yue niu, xiaodong li, shengting li, cunmin qu, jiana li, kun lu*. (2021) population genomics of brassica species. in: om p. rajora (ed.), population genomics: crop plants. springer, cham. https://doi.org/10.1007/13836_2021_98
3. wei chang, yue niu, mengna yu, tian li, jiana l, kun lu*. qprimerdb: a powerful and user-friendly database for qpcr primer design. in: basu, chhandak (ed.) pcr primer design: methods in molecular biology. humana, new york, ny (2022) 2392: 173-182. doi: 10.1007/978-1-0716-1799-1_13
发明专利与著作权
授权专利
1、卢坤，刘绪梅，段回春，曲存民，李加纳. 甘蓝型油菜bna.a08idd7基因启动子及其应用. 202010956413.2，2021年9月11日
2、卢坤，李加纳，张凯，曲存民，梁颖，唐章林. 甘蓝型油菜skip基因家族及其重组载体和应用，cn201510319766.0，2015年8月19日
3、柴友荣，李加纳，梁颖，张凯，卢坤，曲存民，王瑞，王敬乔，陈薇，白菜tt10基因家族及其应用，cn201110459755.4，2012年7月4日
4、梁颖，李加纳，林呐，卢坤，谌利，油菜耐湿调控剂及其应用，cn201310110596.6，2013年4月1日
5、梁颖，李加纳，万华方，卢坤，徐新富，油菜耐湿种子包衣剂及其应用，cn201310110557.6，2013年6月12日
6、雷波，丁福章，卢坤，赵会纳，任竹，蔡凯，潘文杰，反向调节烟草ntpsy基因功能的载体组合物，cn201310528496.5，2014年2月5日
7、曲存民，李加纳，卢坤，付福友，王瑞，徐新福，张凯，与甘蓝型油菜种皮色泽紧密连锁的分子标记及应用，cn201510079032.x，2015年6月24日
软件著作权
1、卢坤，黎小东. 液相snp芯片设计软件[简称：iarray] v1.0. 2021sr1379136，2021年7月31日
国际学术会议报告
1. lu, kun. differential accumulation of phenolic compounds and expression of related genes between the black- and yellow-seeded brassica napus, initialization meeting of crop germplasm resources utilization and innovation base (cgruib) programme, july 17-19, 2012, chongqing, china
2. lu, kun. expression quantitative trait loci analysis of ban, f3h and tt19 genes in brassica napus, 13th international rapeseed congress, june 5–9, 2011, prague, czech republic
3. lu, kun. expression quantitative trait loci analysis of ban, f3h and tt19 genes in brassica napus, 17th crucifer genetics workshop, sept 5-8, 2010, saskatoon, canada
4. lu, kun. cloning and comparative analysis of phosphate-starvation brassica pap12 and pap17 gene families, korea-china joint workshop on brassica genomics, dec 8, 2009, suwon, republic of korea
5. lu, kun. genome-wide association analysis of sclerotinia sclerotiorum and lodging resistance in brassica napus, 14th international rapeseed congress, july 5-9, 2015, saskatoon, canada
6. kun lu. whole-genome resequencing reveals brassica napus origin and genetic loci involved in its domestication and improvement, international workshop on brassica genomics, march 27-28, 2018, wuhan, china
7. lu, kun. whole genome resequencing reveals brassica napus origin and genetic loci involved in its improvement, canadian lipid and bioresource conference 2018, sept 9-11, 2018, saskatoon, canada
8. lu, kun. whole genome resequencing reveals brassica napus origin and genetic loci involved in its improvement, 15th international rapeseed congress, june 16-19, 2019, berlin, germany
9. lu, kun. bnapan50t: an in-solution targeted capture snp array for genomic breeding of brassica napus, the swu 111 project symposium 2021 on crop germplasm resources utilization and innovation—theories and methodologies, dec 8, 2021, chongqing, china